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openmm
mycoplasma genitalium whole-cell model
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simvascular
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blurlab -- 3d microscopy simulation package
whole-cell computational model of mycoplasma genitalium
the musculoskeletal atlas project
open knee(s): virtual biomechanical representations of the knee joint
full body model for use in dynamic simulations of human gait
relating essential proteins to drug side-effects using cca
platform for dynamic simulation and control of movement based on opensim&matlab
deepcell: deep convolutional neural networks for image segmentation
simvascular: cardiovascular modeling and simulation
lower limb model 2010
opensim
openmm
simulated muscle fiber lengths and velocities during walking and running
morphometrics
post­doctoral fellowship: altered control in cerebral palsy
post­doctoral fellowship: tracking & training muscle activity after stroke
see all job openings...
webinar on musculoskeletal simulations combining multiscale data and finite element modeling of the knee
webinar on enabling stochastic simulations of movement with high throughput computing
opensim simulations yield insights into the design of assistive devices to reduce the metabolic cost of running
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course on open-source tools for computational biomechanics
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cardiovascular system /category/category.php?cat=309&sort=date&page=0&srch=&
cell /category/category.php?cat=421&sort=date&page=0&srch=&
myosin /category/category.php?cat=308&sort=date&page=0&srch=&
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network modeling and analysis /category/category.php?cat=426&sort=date&page=0&srch=&
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openmm

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learn more /projects/openmm

mycoplasma genitalium whole-cell model

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opensim

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cardiovascular system /category/category.php?cat=309&sort=date&page=0&srch=&
cell /category/category.php?cat=421&sort=date&page=0&srch=&
myosin /category/category.php?cat=308&sort=date&page=0&srch=&
neuromuscular system /category/category.php?cat=310&sort=date&page=0&srch=&
protein /category/category.php?cat=406&sort=date&page=0&srch=&
rna /category/category.php?cat=307&sort=date&page=0&srch=&
tissue /category/category.php?cat=420&sort=date&page=0&srch=&
experimental analysis /category/category.php?cat=411&sort=date&page=0&srch=&
image processing /category/category.php?cat=412&sort=date&page=0&srch=&
network modeling and analysis /category/category.php?cat=426&sort=date&page=0&srch=&
physics-based simulation /category/category.php?cat=409&sort=date&page=0&srch=&
statistical analysis /category/category.php?cat=416&sort=date&page=0&srch=&
visualization /category/category.php?cat=415&sort=date&page=0&srch=&
opensim /category/communitypage.php?cat=1001&sort=date&page=0&srch=&
shoulder modeling /category/communitypage.php?cat=1002&sort=date&page=0&srch=&
see all communities... /communities.php
post­doctoral fellowship: altered control in cerebral palsy /opportunities.php#job1
post­doctoral fellowship: tracking & training muscle activity after stroke /opportunities.php#job2
see all job openings... /opportunities.php
webinar on musculoskeletal simulations combining multiscale data and finite element modeling of the knee /plugins/simtk_news/news_details.php?group_id=91&id=263&flag=1
- /users/blanca
webinar on enabling stochastic simulations of movement with high throughput computing /plugins/simtk_news/news_details.php?group_id=91&id=259&flag=1
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opensim simulations yield insights into the design of assistive devices to reduce the metabolic cost of running /plugins/simtk_news/news_details.php?group_id=91&id=258&flag=1
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webinar on best practices and lessons learned in getting biogears adopted /plugins/simtk_news/news_details.php?group_id=848&id=255&flag=1
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course on open-source tools for computational biomechanics /plugins/simtk_news/news_details.php?group_id=91&id=254&flag=1
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Linki zewnętrzne

muscle-actuated simulation of human running https://simtk.org/projects/runningsim/
blurlab -- 3d microscopy simulation package https://simtk.org/projects/blurlab/
whole-cell computational model of mycoplasma genitalium https://simtk.org/projects/wholecell/
the musculoskeletal atlas project https://simtk.org/projects/map/
open knee(s): virtual biomechanical representations of the knee joint https://simtk.org/projects/openknee/
full body model for use in dynamic simulations of human gait https://simtk.org/projects/full_body/
relating essential proteins to drug side-effects using cca https://simtk.org/projects/side-effect/
platform for dynamic simulation and control of movement based on opensim&matlab https://simtk.org/projects/opensim-matlab/
deepcell: deep convolutional neural networks for image segmentation https://simtk.org/projects/deepcell/
simvascular: cardiovascular modeling and simulation https://simtk.org/projects/simvascular/
lower limb model 2010 https://simtk.org/projects/lowlimbmodel09/
opensim https://simtk.org/projects/opensim/
openmm https://simtk.org/projects/openmm/
simulated muscle fiber lengths and velocities during walking and running https://simtk.org/projects/muscfib_walkrun/
morphometrics https://simtk.org/projects/morphometrics/
uw ability & innovation lab https://depts.washington.edu/uwsteele/
uw ability & innovation lab https://depts.washington.edu/uwsteele/
opensim https://simtk.org/projects/opensim/
opensim https://simtk.org/projects/opensim/
opensim https://simtk.org/projects/opensim/
http://opensim.stanford.edu http://opensim.stanford.edu
credible practice of modeling & simulation in healthcare https://simtk.org/projects/cpms/
opensim https://simtk.org/projects/opensim/
viewfarm http://www.viewfarm.com/
graphberry http://graphberry.com
www.flaticon.com http://www.flaticon.com
fusionforge http://fusionforge.org

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toggle navigation projects people projects project categories biological applications cardiovascular system cell myosin neuromuscular system protein rna tissue biocomputational focus experimental analysis image processing network modeling and analysis physics-based simulation statistical analysis visualization communities opensimshoulder modelingall communities create a new project about what is simtk? history features case studies faq support how to use simtk contact --> what is simtk? features faq contact sign up log in enabling groundbreaking biomedical research via open access to high-quality simulation tools, accurate models, and the people behind them. 916 projects 446129 downloads 56980 members join us openmm an open-source toolkit for molecular simulation with extreme flexibility through custom forces and integrators and extreme performance through gpu acceleration... learn more mycoplasma genitalium whole-cell model a detailed computational model of the entire life cycle of the bacterium mycoplasma genitalium... learn more opensim state-of-the-art modeling and simulation software for advancing our understanding of movement and designing improved treatments for movement abnormalities... learn more simvascular providing a complete pipeline for patient-specific modeling from medical image data to cardiovascular blood flow simulation and analysis... learn more feature modeling and finding functional domains in proteins by analyzing the structures of functionally similar proteins using supervised machine learning algorithms... learn more previous next trending projects muscle-actuated simulation of human running the purpose of this study was to determine how muscles contribute to propulsion (i.e., the fore-aft acceleration) and support (i.e., the vertical acceleration) of the body mass center during running. downloads last week: 25 total downloads: 8,247 blurlab -- 3d microscopy simulation package simulate the full 3d light field of a fluorescence microscope and custom psfs, perform tirf, frap or z-slicing, add noise, and generate output images. downloads last week: 105 whole-cell computational model of mycoplasma genitalium this project provides all code and data for the first "whole-cell" model of the entire life cycle of a living organism, mycoplasma genitalium. downloads last week: 29 total downloads: 13,029 the musculoskeletal atlas project provides an easy-to-use application for visualising imaging data, segmenting images, creating geometric meshes, and exporting opensim and fe models. forum posts last week: 1 open knee(s): virtual biomechanical representations of the knee joint overall purposes of the project are: 1) to provide free access to three-dimensional finite element representations of the knee joint 2) open development of knee models for collaborative testing and use downloads last week: 19 total downloads: 6,731 full body model for use in dynamic simulations of human gait full body musculoskeletal model with muscle-actuated lower extremity and torque-actuated torso/upper extremity for use in dynamic simulations of human movement. downloads last week: 14 total downloads: 629 relating essential proteins to drug side-effects using cca provide novel insights about the molecular mechanisms of drug side-effects forum posts last week: 1 platform for dynamic simulation and control of movement based on opensim&matlab this project overcomes neuromusculoskeletal systems limitations of matlab®/simulink® and robust design & control limitations of opensim through an interface between these two software packages that combines relevant strengths of each individual package. new followers: 1 new members: 1 deepcell: deep convolutional neural networks for image segmentation provide source code for deep learning based image segmentation downloads last week: 17 total downloads: 387 simvascular: cardiovascular modeling and simulation provides a platform for patient-specific cardiovascular modeling and simulation. downloads last week: 97 forum posts last week: 6 new download files: 3 total followers: 28 total downloads: 6,404 lower limb model 2010 provide models that can estimate force and moment generating capacity of the lower limb and reveal relationships between muscle architecture and function. downloads last week: 22 total downloads: 4,468 opensim provide easy-to-use, extensible software for modeling, simulating, controlling, and analyzing the neuromusculoskeletal system. downloads last week: 715 forum posts last week: 32 total followers: 115 new followers: 2 total downloads: 157,457 openmm openmm includes everything one needs to run modern molecular simulations. it is extremely flexible with its custom functions, is open-source, and has high performance, especially on recent gpus. downloads last week: 647 forum posts last week: 4 total followers: 28 total downloads: 81,874 simulated muscle fiber lengths and velocities during walking and running distribution of simulation results that we used to generate the attached publication. downloads last week: 17 total downloads: 200 morphometrics open source quantitative image processing platform, for object segmentation and shape analysis. downloads last week: 14 by category biological applications cardiovascular system cell myosin neuromuscular system protein rna tissue biocomputational focus experimental analysis image processing network modeling and analysis physics-based simulation statistical analysis visualization communities opensimshoulder modelingsee all communities... jobs post­doctoral fellowship: altered control in cerebral palsy uw ability & innovation lab august 11, 2016 the university of washington’s ability & innovation lab has an opening for a postdoctoral fellow. post­doctoral fellowship: tracking & training muscle activity after stroke uw ability & innovation lab august 11, 2016 the university of washington’s ability & innovation lab has an opening for a postdoctoral fellow focused on creating mobile technology to track and train muscle activity after stroke. see all job openings... news webinar on musculoskeletal simulations combining multiscale data and finite element modeling of the knee opensim jan 10, 2017 we invite you to join us for a webinar featuring kevin shelburne, alessandro navacchia, and azhar ali from the university of denver to learn about linking joint-level deformable finite element models with multibody musculoskeletal simulations. webinar on enabling stochastic simulations of movement with high throughput computing opensim nov 9, 2016 we invite you to join us for a webinar featuring colin smith and darryl thelen from the university of wisconsin-madison to learn how to run opensim simulations on the open science grid and conduct probabilistic analyses to characterize your simulations. opensim simulations yield insights into the design of assistive devices to reduce the metabolic cost of running opensim oct 25, 2016 mobilize center researcher thomas uchida and opensim (http://opensim.stanford.edu) researchers published a paper in plos one where they generated muscle-driven simulations of movement to augment experimental data and provide insights into the design of assistive devices to reduce energy consumption during running. webinar on best practices and lessons learned in getting biogears adopted credible practice of modeling & simulation in healthcare sep 1, 2016 the committee for credible practice of modeling & simulation in healthcare (cpms) invites you to join us for an informative webinar featuring jeff webb from applied research associates on translating physiology modeling and simulation research into the clinic. course on open-source tools for computational biomechanics opensim aug 30, 2016 the opensim team is participating in an ieee boston workshop on thursday, september 15, 2016 that introduces participants to three open-source tools: gibbon for image segmentation; febio for finite element analysis; and opensim for musculoskeletal modeling and simulation. simtk is maintained through grant r01 gm107340 from the national institutes of health (nih). it was initially developed as part of the simbios project funded by the nih as part of the nih roadmap for medical research, grant u54 gm072970.our pledge and your responsibility feedback   about   joinversion 2.0.8. website design by viewfarm. icons created by simtk team using art by graphberry from www.flaticon.com under a cc by 3.0 license. forked from fusionforge 5.3.2. #fdf8e1 @light_yellow #f75236 @red #f5b563 @orange #81a5d4 @light_blue #5e96e1 @dark_blue #505050 @dark_grey #000000 @black #a7a7a7 @light_grey feedback


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